Index of types
Index of exceptions
Index of values
Index of modules
Index of module types


Cgr
MyCGR: Collection of modules to manipulate DNA sequences, and compute and use the Chaos Game Representation.
Cgr_binary
Parameters modules for the binary method.
Cgr_cenac
The Cenac method
Cgr_cenac_main
Functors to create tools for segment and square methods.
Cgr_cenac_options
Common options used in various tools.
Cgr_cenac_random
Cgr_cenac_test
Functors to create test tools for various methods.
Cgr_cenac_zones
To create various versions of the zones tool.
Cgr_config
Configuration values.
Cgr_constants
Constants used.
Cgr_db
Cgr_dbbase
Cgr_dbseqs
Cgr_dbtree
Cgr_dbzones
Cgr_distances
Handling distance matrices.
Cgr_entrez
Retrieving sequences from NCBI Entrez database.
Cgr_eqn
Solving non-linear equations.
Cgr_extmath
Using external tool to compute values.
Cgr_fasta
Cgr_generic
Module to compute CGR on any dimension, with any number of nucleotides.
Cgr_global
Global values.
Cgr_latex
Printing LaTeX code.
Cgr_lineage
Cgr_longarray
Long arrays.
Cgr_matrix
Using simple matrices.
Cgr_misc
Misc functions
Cgr_neighbor
formulas from infobiogen
Cgr_pearson
The Pearson statistic.
Cgr_quantiles
Using Chi deux quantiles
Cgr_random_seq
MWC generator, period length 1014595583.
Cgr_repartition
Cgr_run_tests
Cgr_segment
Parameters modules for the segment method.
Cgr_seq
Manipulating sequences.
Cgr_simu
Simulating with IID and Markov sequences.
Cgr_space
point_plan_projection M (A, B, C) returns the projection of M on plan defined by three points A B C.
Cgr_square
Parameters modules for the square method.
Cgr_square_base
Basic definition for square
Cgr_square_types
Cgr_square_zones
Cgr_store
Cgr_test_frequency
Teste l'indépendance et non l'équité des éléments
Cgr_tetra
Parameters modules for the tetrahedron method.
Cgr_tree
Building and computing on trees.
Cgr_types
Basic types